Research in Plant Metabolites

Research in Plant Metabolites

Alteration of exo gene expression in clinical isolates of antibiotic-resistant Pseudomonas aeruginosa treated with plant metabolites (allicin and thymol)

Document Type : Original Article

Authors
Department of Biology, Ra.C., Islamic Azad University, Rasht, Iran
10.22034/jrpsm.2026.574356.1108
Abstract
Background and Objective: Pseudomonas aeruginosa is a common cause of hospital-acquired infections due to its high pathogenicity potential. The spread of antibiotic resistance, especially in gram-negative bacteria, has led to the development of plant antibiotic compounds for the treatment of infections caused by these bacteria. In this study, the antimicrobial effects of the active ingredient allicin in garlic and thymol in a number of medicinal plants, including thyme, on the expression of exoA, exoS, and exoT genes of P. aeruginosa as important pathogenic factors were investigated.
Materials and Methods: Fifty clinical isolates from different patients were studied along with the Standard strain of P. aeruginosa ATCC27853. Various biochemical tests were performed to purify the bacteria, including the ability to produce hemolysin, oxidase, catalase, urease, growth ability at 42 °C, growth profile in Mac Conkey, TSI, SIM, and Mueller Hinton media, and Gram staining. Antibiogram tests were performed on Mueller Hinton agar culture medium along with determination of P. aeruginosa sensitivity by disk diffusion method on antibiotics Cefepime, Gentamicin, Amikacin, Ceftazidime, Imipenem, and Ciprofloxacin (based on CLSI) and disks impregnated with the active ingredient allicin and thymol in the culture medium. After that, the zone of inhibition of bacterial growth was measured. Then MBC and MIC were performed, and DNA and RNA extraction, cDNA synthesis, and finally, Real-time PCR was performed to determine the effect of the active ingredients allicin and thymol on the expression of exoA, exoS, and exoT at subMIC concentrations.
Results: Out of 50 clinical isolates studied, 40 isolates of P. aeruginosa were identified and confirmed. The mean diameter of the inhibition zone of P. aeruginosa isolates at 10 mg.ml-1 allicin and thymol were 19.2 and 17 mm, respectively. The highest resistance of bacteria to the antibiotics Ceftazidime and Imipenem, and the lowest to Amikacin and Gentamicin. The MIC was represented by a dilution of 1:8 and a concentration of 1.25 mg.ml-1 allicin and thymol, and the MBC was represented by a dilution of 1:2 and a concentration of 2.5 mg.ml-1 allicin and thymol. The presence of the studied exo genes in clinical isolates of P. aeruginosa was confirmed in the PCR product of the bacterial genome extracted with primers specific for each gene. The results obtained from real-time PCR showed that allicin at a subMIC concentration (0.6 mg.ml-1) in this study reduced the expression of exoA, exoS and exoT genes in P. aeruginosa isolates. Data analysis showed that the expression of exoT and exoS genes in P. aeruginosa isolates treated with allicin was significantly reduced (P<0.001) and the exoA gene was significantly reduced (P<0.01). Also, the expression of exoA and exoS genes in Pseudomonas isolates treated with the active ingredient thymol at a subMIC concentration (0.6 mg.ml-1) was significantly reduced (P<0.001).
Conclusion: This study showed that the active ingredient allicin in garlic and thymol in thyme, with a significant bactericidal effect, reduce the expression of exo genes in P. aeruginosa. It is hoped that the results obtained in the future, after conducting standard clinical research, will lead to the production of a drug containing the active ingredients allicin and thymol with a strong antibacterial effect.
Keywords

Aghaei, S., Javadi, A., Sharifi, Y. & Marvati A. )2016(. Detection of exotoxin genes A, Y, T, U, S in Pseudomonas aeruginosa resistant to third-generation cephalosporins isolated from clinical samples of patients hospitalized in Qom hospitals, Qom University of Medical Sciences Journal, 1(10): 48-49 (In persian). https://doi: 20.1001.1.17357799.1395.10.1.9.9.
Althunibat, O., Qaralleh, H., Sati, Y., Muayad, A., Khleifat, K.H., Ibrahim, S., Majali, H. & Aldalin Walid, A. )2011(. Effect of Thymol and Carvacrol, the Major Components of Thymus capitates on the Growth of Pseudomonas aeruginosa. Journal of pure and applied microbiology, 10(6): 367-374. https://doi: 10.22207/JPAM.10.1.49.
Arbabi klati, F., shirazi, M., pourzamani, M. & Dabiri, S. (2018). Comparing the effect of herbal extracts of thyme, cloves, and cinnamon with nystatin on the inhibition of Candida albicans. Journal of Research in Dental Sciences, 8(4):175-179 (In persian). https://doi: 20.1001.1.20084676.1390.8.4.3.8.
Ataei, S. & Pourghaffar H. (2025). Investigation of the effect of the active ingredient allicin and cinnamon on beta-lactam-resistant Pseudomonas aeruginosa under invitro conditions and bioinformatics study. Iranian Journal of Medicinal and Aromatic Plant Research, 42(1):584-590(In Persian). https://doi: 10.22092/ijmapr.2026.368772.3524.
Augustin, D., Song, Y., Beak, M., Sawa, Y. & Singh, G. (2007). Presence or absence of lipopolysaccharide O antigens affects type III secretion by Pseudomonas aeruginosa. Journal of Bacteriology, 189(6): 204-213. https://doi: 10.1128/JB.01839-06.
Cutler, R. & Wilson, P. (2020). Antibacterial activity of a new, stable, aqueous extract of allicin against  methicillin-resistant Staphylococcus aureus. British journal of Biomedical science, 61(2): 71-4. https://doi10.1080/09674845.2004.11732646.
Davies, J. & Ryan, KS. (2012). Introducing the parvome: Bioactive compounds in the microbial world. ACS Chemical Biology, 225-252. https://doi10.1021/cb200337h. 
Dehghan, A., Ebadi, M, Naqdabadi, H., Shahriari, F., Azizi, M. & Asghari, G. (2009). A review of new techniques in the production of tropane alkaloids. Journal of Medicinal Plants, 9(1): 33 (In Persian). https://doi: 20.1001.1.2717204.2010.9.33.18.4.
Fitriana, N., Aniya, A., Pamasyah, F., Anam, M. & Lestari, S. (2019). The effectiveness comparison of single bulb garlic extract for antibacterial agent Pseudomonas aeruginosa. International Conference on Life Sciences and Technology, 12-28. https://doi: 10.1088/1755-1315/276/1/012028.
Forbes, B.A., Sahm, D.F. & Weissfeld, A.S. (2009). Diagnostic Microbiology. 11th ed. Missouri: Mosby Company, 389-391.  
García-Salinas. S., Elizondo-Castillo, H., Arruebo, M., Mendoza, G. & Irusta, S. (2018). Evaluation of the Antimicrobial Activityand Cytotoxicity of Different Components of Natural Origin Present in Essential Oils, Molecules. 23(1): 39-49. https://doi: 10.3390/molecules23061399.
Jabal Ameli, L., Aini, M. & Jabal Ameli, F. (2017). Evaluation of antibiotic resistance patterns, detection of exo genes and determination of biofilm formation ability of Pseudomonas aeruginosa isolates obtained from blood and urine samples. Journal of Molecular Cellular Biotechnology, 28(7): 62-66 (In Persian). https://doi: 20.1001.1.22285458.1396.7.28.7.1.
JLee, E., Acowell, B., JEvans, D. & Fleiszig, S. (2003). Contribution of exsA–regulated factors to corneal infection by cytotoxic and invasive Pseudomonas aeruginosa in a murine scarification model. Investigative Ophthalmology and Visual Science, 44(9): 3892-3898. https://doi: 10.1167/iovs.02-1302.
Khodai Motlagh, M., Rahimi, M., Khormian, B., Derlich, M. & Azizzadeh, M. (2021).  Monitoring udder health status using somatic cell counts in Holstein dairy herds in northeastern Iran and the effectiveness of a 10-point mastitis control program. Iranian Veterinary Journal, 22(4): 326-330 (In Persian). https://doi: 10.22099/IJVR.2021.40046.5805.
Mokhtari, Kh. & Amini, K. (2020). Molecular identification of virulence genes in Pseudomonas aeruginosa isolated from human and animal samples and their antibiotic resistance pattern. Iranian journal of medical microbiology, 13(7):  294-296. https://doi: 10.30699/ijmm.13.4.294.
Molana, Z. & Shahandeh, Z. (2003). The effect of garlic and its extract on inhibiting the growth of Pseudomonas aeruginosa. Scientific Journal of Babol Faculty of Medical Sciences, 5(3): 57-62 (In persian). https://doi:: 20.1001.1.15614107.1382.5.3.10.7.
Muhammad Wada, N., Adamu Ambi, A., Aliyu Ibrahim, A., Kirfi Bello, S., Abdullahi U., Timothy James, D. (2021). Antimicrobial Activity of Extracts of Turmeric (Curcuma longa) and Garlic (Aliium sativum) Against Selected Bacterial Clinical Isolates. Mediterranean Journal of Infection Microbes and Antimicrobials, 10(6): 1-7. https://doi: 10.4274/mjima.galenos.2021.2020.6.
Okoye, A. & Famefuna, L. (2010). Invitro Determination of Bactericidal Effects of Garlic (Allium sativum) on Staphylococcus aureus and Escherichi coli. Nigerian Journal of Scinece, Technology and Environmental Education (NIJOSTEE), 3(1): 28-29. https://doi: https://doi: 10.20546/ijcmas.2019.809.060.
Omidbeigi, R. (1997). Production and processing of medicinal plants. Tehran: Tararan Pub, 72 (In Persian).
Shen-kang, Q., Bonnet, L., Kuhn, M., Derouazi, L. & Lamdtte, D. (2008). Orf1/ Spcs chaperones exoS for type three secretion by Pseudomonas aeruginosa. Biomedical and Enviromental Sciences, 21(2): 103-109. https://doi: 10.1016/S0895-3988(08)60014-8.
Zahedani, S., Jahantigham, M. & Amini, Y. (2018). Determination of antibiotic resistance pattern in clinical isolates of Pseudomonas aeruginosa. Journal of the Faculty of Medicine, Tehran University of Medical Sciences, 8(76): 517-518 (In Persian). https://doi: 10.29252/iau.28.3.212.